Acknowledgements The U.S. Environmental Protection Agency, through its Office of Research and Development and the RARE program, funded, managed, and collaborated in the research described herein. This work has been subjected to the agency’s administrative review and has been approved for external publication. Any opinions expressed in this paper are those of the authors and do not necessarily reflect the views of the agency; therefore, no official endorsement should be inferred. Any mention of trade names or commercial products does not constitute endorsement or recommendation

for use. The authors thank B. Iker, M. Kyrias, D. Strattan, B. Farrell, E. Luber, M. Nolan, C. Salvatori, J. Shelton, and P. Bermudez for their assistance in the laboratory and the field. H. Ryu received funding through a fellowship from the National Research Council. This work was also supported in part through funding from QNZ datasheet the Department of Energy grant DE-FG02-02ER15317, a Director’s Postdoctoral Fellowship from Argonne National Laboratory to T. Flynn, and the SBR SFA at Argonne National Laboratory which is supported by the Subsurface Biogeochemical

Research Program, Office of Biological and Environmental Compound C datasheet Research, Office of Science, U.S. Department of Energy (DOE), under contract DE-AC02-06CH11357. Electronic supplementary material Additional file 1: Table S1: Energy available for microbial respiration. Figure S1. Collectors

curves showing how the total richness of the bacterial community increases with greater sampling depth. Figure S2. Collectors curves showing how the total richness of the archaeal community increases PRKACG with greater sampling depth. Figure S3. Available energy (∆G A) for either the anaerobic oxidation of methane (AOM) or methanogenesis with increasing amounts of dihydrogen (H2) in Mahomet aquifer groundwater. Figure S4. Multidimensional scaling (MDS) LY2606368 ordination of the Bray-Curtis coefficients of similarity for attached microbial communities in the Mahomet aquifer. Figure S5. Multidimensional scaling (MDS) ordination of the Bray-Curtis coefficients of similarity for suspended microbial communities in the Mahomet aquifer. (DOCX 460 KB) References 1. Fredrickson JK, Balkwill DL: Geomicrobial processes and biodiversity in the deep terrestrial subsurface. Geomicrobiol J 2006, 23:345–356.CrossRef 2. Bethke CM, Ding D, Jin Q, Sanford RA: Origin of microbiological zoning in groundwater flows. Geology 2008, 36:739–742.CrossRef 3. Park J, Sanford RA, Bethke CM: Microbial activity and chemical weathering in the Middendorf aquifer, South Carolina. Chem Geol 2009, 258:232–241.CrossRef 4. Borch T, Kretzschmar R, Kappler A, Cappellen PV, Ginder-Vogel M, Voegelin A, Campbell K: Biogeochemical redox processes and their impact on contaminant dynamics. Environ Sci Technol 2009, 44:15–23.CrossRef 5.